Academia

Metagenomics vs. total RNA-Seq for SSU assembly
My second PhD chapter. Comparing metagenomics vs. total RNA-Seq data, including data-processing pipelines, for SSU assembly.
Metagenomics vs. total RNA-Seq for SSU assembly
Predicting environmental stressor levels with machine learning
My third PhD chapter. Predicting environmental stressor levels with machine learning, including a comparison between amplicon sequencing, metagenomics, and total RNA sequencing based on taxonomically assigned data.
Predicting environmental stressor levels with machine learning
European lakes biodiversity assessments
My Bachelor thesis. Analyzing the biodiversity of 21 European lakes; part of a bigger project to analyze the biodiversity of lakes across Europe, which led to a publication.
European lakes biodiversity assessments
Mitogenome assembly evaluation
Comparing mitochondrial genome assembly and annotation tools as part of a publication on the mitogenomes of biting midges.
Mitogenome assembly evaluation
Metagenomics vs. total RNA-Seq for microbial community analysis
My first PhD chapter. Comparing metagenomics vs. total RNA-Seq data, including data-processing pipelines, for microbial abundance estimations. Involves testing 1,536 combinations of data-processing tools.
Metagenomics vs. total RNA-Seq for microbial community analysis